Database Config

This instance of LAPIS uses the following configuration file:

schema:
  instanceName: sars_cov-2_nextstrain_open
  opennessLevel: OPEN
  metadata:
    - name: ace2Binding
      type: float
    - name: age
      type: int
    - name: authors
      type: string
      lapisAllowsRegexSearch: true
    - name: country
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: countryExposure
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: database
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: date
      type: date
    - name: dateDay
      type: int
    - name: dateMonth
      type: int
    - name: dateOriginalValue
      type: string
      lapisAllowsRegexSearch: true
    - name: dateSubmitted
      type: date
    - name: dateSubmittedDay
      type: int
    - name: dateSubmittedMonth
      type: int
    - name: dateSubmittedOriginalValue
      type: string
      lapisAllowsRegexSearch: true
    - name: dateSubmittedYear
      type: int
    - name: dateUpdated
      type: date
    - name: dateUpdatedDay
      type: int
    - name: dateUpdatedMonth
      type: int
    - name: dateUpdatedOriginalValue
      type: string
      lapisAllowsRegexSearch: true
    - name: dateUpdatedYear
      type: int
    - name: dateYear
      type: int
    - name: division
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: divisionExposure
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: genbankAccession
      type: string
    - name: genbankAccessionRev
      type: string
    - name: gisaidClade
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: gisaidEpiIsl
      type: string
    - name: host
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: immuneEscape
      type: float
    - name: location
      type: string
      lapisAllowsRegexSearch: true
    - name: nextcladeCoverage
      type: float
    - name: nextcladePangoLineage
      type: string
      generateIndex: true
      generateLineageIndex: true
    - name: nextcladeQcFrameShiftsScore
      type: float
    - name: nextcladeQcMissingDataScore
      type: float
    - name: nextcladeQcMixedSites
      type: float
    - name: nextcladeQcMixedSitesScore
      type: float
    - name: nextcladeQcOverallScore
      type: float
    - name: nextcladeQcPrivateMutationsScore
      type: float
    - name: nextcladeQcSnpClustersScore
      type: float
    - name: nextcladeQcStopCodonsScore
      type: float
    - name: nextstrainClade
      type: string
      generateIndex: true
    - name: originatingLab
      type: string
      lapisAllowsRegexSearch: true
    - name: pangoLineage
      type: string
      generateIndex: true
      generateLineageIndex: true
    - name: region
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: regionExposure
      type: string
      generateIndex: true
      lapisAllowsRegexSearch: true
    - name: samplingStrategy
      type: string
      generateIndex: true
    - name: sex
      type: string
      generateIndex: true
    - name: sraAccession
      type: string
    - name: strain
      type: string
    - name: submittingLab
      type: string
    - name: whoClade
      type: string
      generateIndex: true
    - name: died
      type: boolean
    - name: fullyVaccinated
      type: boolean
    - name: hospitalized
      type: boolean
    - name: nextcladeDatasetVersion
      type: string
  features:
    - name: sarsCoV2VariantQuery
  primaryKey: strain
  dateToSortBy: date